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Computational Genomics and Transcriptomics @ GIS

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All things fun…

March 18, 2020

Non-science lab life… … More All things fun…

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Transcriptomics Workshop INCOB 2016

September 20, 2016

Jonathan will present about transcriptomics data analysis at INCOB 2016. … More Transcriptomics Workshop INCOB 2016

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Research Internships in Singapore 2019/2020

July 12, 2019

Are you interested in a scientific career in computational biology? Would you like to live in Asia for up to 6 months? Are you a student in Bioinformatics, Computer Science, or Statistics? If so, then the following offer will be of interest to you: … More Research Internships in Singapore 2019/2020

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PhD Scholarships 2020

July 1, 2019

PhD projects in our lab are available starting January 2020. Candidates should have a B.Sc. or M.Sc. in bioinformatics, computer science, or statistics, and be enthusiastic about science! … More PhD Scholarships 2020

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News Archive

January 1, 2019

Archive of news from our group … More News Archive

News Archive

PhD Scholarships 2019

January 9, 2018

PhD projects in our lab are available starting January 2019. Candidates should have a B.Sc. or M.Sc. in bioinformatics, computer science, or statistics, and be enthusiastic about science! … More PhD Scholarships 2019

PhD Scholarships 2019

Research Internships in Singapore -2018

August 16, 2017

Are you interested in a scientific career in computational biology? Would you like to live in Asia for up to 6 months? Are you a student in Bioinformatics, Computer Science, or Statistics? If so, then the following offer will be of interest to you: … More Research Internships in Singapore -2018

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Research Internships in Singapore

October 10, 2016

Are you interested in a scientific career in computational biology? Would you like to live in Asia for up to 6 months? Are you a student in Bioinformatics, Computer Science, or Statistics? If so, then the following offer will be of interest to you: … More Research Internships in Singapore

Research Internships in Singapore

PhD Scholarships 2017

October 10, 2016

PhD projects in our lab are available starting August 2017. Candidates should have a B.Sc. or M.Sc. in bioinformatics, computer science, or statistics, and be enthusiastic about science! … More PhD Scholarships 2017

PhD Scholarships 2017

Recent Lab News

28/07/2020: Congratulations Chen Ying for reeiving the Best Talk award in HiTSeq/ISMB 2020! Chen Ying presented about her method, bambu, for transcript discovery and quantification using Nanopore long read RNA-Seq data (https://github.com/GoekeLab/bambu)

26/06/2020:New Preprint from Ploy Pratanwanich about her method that enables the analysis of differential RNA modifications using direct RNA-Seq data: https://www.biorxiv.org/content/10.1101/2020.06.18.160010v1.full  xPore is available through github page: https://github.com/GoekeLab/xpore you can read the documentation here

18/06/2020: Chen Ying and Ploy Pratanwanich will present their work on RNA modifications and transcript quantification at London Calling 2020. You can test their software on out github page: https://github.com/GoekeLab

26/03/2020: The DREAM Challenge paper on multiple myeloma risk prediction is published (you can read it here). Congratulations again to Christine and Jiayi from our group for winning this challenge and contributing the best performing predictor!

05/02/2020: The Pan Cancer Analysis of Whole Genomes (PCAWG) is published! Congratulations to everyone involved from our group, GIS and all international collaborators (see publications)

Nature_PCAWG

31/01/2020: Congratulations for winning the Genome Institute of Singapore graduate student prize Deniz!

13/01/2020: Deniz has prepared detailed supplementary tables for his manuscript (Demircioglu et al. (2019)). You can find the additional information here

05/11/2019: Jonathan presents at the Frontiers in Cancer Science meeting in Singapore

05/09/2019: Our first paper is published on the cover of Cell! Congratulations to the first author Deniz Demircioglu and everyone else who has contributed! You can read the article here.

01/07/2019: Postdoctoral positions are available for computational postdocs to work on long read direct RNA-Sequencing, you can contact Jonathan for more details

28/2/2019: You can watch a webinar on the Singapore Nanopore-Expression project today

15/2/2019: Happy Chinese New Year! Some updates to the team site and new pictures from this year’s Lo Hei

1/1/2019: Happy New Year from the Göke lab! Some updates coming soon…

29/11/2018: Jonathan will present data from the Singapore Nanopore-Expression Consortium (SG-NEx) at the Nanopore Community Meeting in San Francisco

16/09/2018:3 new lab members joined us in August and September: Welcome Naruemon Pratanwanich (Ploy), Chen Ying, and Christopher Hendra!

10/09/2018: Jonathan gives a talk about Precision Medicine and Genomics Technologies in Singapore at the Data Science in Health Symposium, Marina Bay Sands Expo & Convention Centre

24/06/2018: New publication from the Göke lab in collaboration with Azims Surani and Chris Smith in Cambridge: SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements.

16/03/2018: Jonathan present at the Global Young Investigator Forum 2018 in Nagoya, Japan

14/03/2018: Jonathan will present 2 workshops on analysing ChIP-Seq data, RNA-Seq data, and experimental design at Nagoya University

10/01/2018: New postdoc position available! Have a look in the postdoc section and feel free to write to Jonathan for more information.

14/12/2017: Our team ranked top in the Dream Multiple Myeloma Risk Prediction machine learning challenge! Congratulations to Christine Eng and Jiayi Bao!

07/11/2017: Jonathan presents at the EMBL Cancer Genomics meeting in Heidelberg
13/09/2017: Jonathan will give a talk in the Computational Biology lunchtime seminar at DUKE-NUS today, 12-1pm

16/08/2017: The lab’s first biorxiv preprint is posted online: A pan cancer analysis of promoter activity highlights the regulatory role of alternative transcription start sites and their association with noncoding mutations

31/07/2017: Christine Eng joined our group to work on machine learning using genomics and clinical data. Welcome Christine!

24/07/2017: Deniz Demircioglu from our group presents his work on promoters in cancer at ISMB 2017 in Prague. Congratulations Deniz

09/05/2017: Jonathan will present about the group’s work on promoters in cancer at the CSH Biology of Genomes meeting.

20/04/2017: Martin Kindermans joined our group in March. Welcome!

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Lab pictures

Farewell (Martin), Welcome (Christine), and preprint celebration with Korean BBQ & Grapfruit Soju
Farewell (Martin), Welcome (Christine), and preprint celebration with Korean BBQ & Grapfruit Soju
Birthday cake
Birthday cake
Lo Hei 2019
Lo Hei 2019
Lo Hei at GIS 2019
Lo Hei at GIS 2019
Birthday celebration
Birthday celebration
Deniz at ISMB 2017
Farewell for Jiayi with Korean food and Soju
Christmas Dinner
Christmas Dinner
Birthday Cake :)
Birthday Cake :)
Lab dinner
Lab dinner
Birthday Martin
Paper celebration
Paper celebration
GIS Dinner and Dance 2019
GIS Dinner and Dance
Watermelon in the rainforest
Watermelon in the rainforest
Cake :)
Cake :)
Queuing for chicken rice
Queuing for chicken rice
Lunch!
Lunch!
Birthday cake for Jyn Ling
Birthday cake for Jyn Ling
Baklava from Istanbul - Thanks Engin!
Baklava from Istanbul – Thanks Engin!
Lab dinner: Dim Sum
Lab dinner: Dim Sum
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