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Computational Transcriptomics @ GIS

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Data and Software

Software and data sets that are developed and released by our team are documented on our GitHub page: https://github.com/GoekeLab

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We are thrilled to release Bambu-pipe 🧬🚀 A Nextflow pipeline built for speed, scalability, and precision — unlocking isoform-level insights from long-read single-cell and spatial RNA-seq data💡🔗 GitHub: github.com/GoekeLab/bambu-pipe📄 Preprint: doi.org/10.1101/2024.12.30.630828

— Goeke Lab (@goekelab.bsky.social) 2026-05-11T02:59:08.914Z

We are thrilled to release Bambu-pipe 🧬 – supercharge your transcriptomics discovery.

🚀 Speed. Scalability. Precision. Isoform-level insights from long-read single-cell & spatial RNA-seq.

🔗 https://t.co/Vmx9ffvA1p
📄 https://t.co/QSWyabjOMz

— Computational Transcriptomics (@goekelab) May 11, 2026

The new long read cDNA kit by @nanoporetech.com is a major upgrade (and improvement!), substantially increasing read length, with a strong impact on transcript discovery and quantification. We @goekelab.bsky.social have tested this in the beta release, more updates soon #nanoporeconf

— Jonathan Göke (@jonathangoeke.bsky.social) 2026-05-22T09:06:10.183Z

Lab pictures

Deniz at ISMB 2017
Birthday celebration
Birthday celebration
IMG_6835
Lab dinner
Lab dinner
Lo Hei at GIS 2019
Lo Hei at GIS 2019
Deniz_graduateStudentPrize
IMG_6836
Birthday Cake :)
Birthday Cake :)
Paper celebration
Paper celebration
Lunch!
Lunch!
IMG_7776
Lo Hei 2019
Lo Hei 2019
Birthday cake for Jyn Ling
Birthday cake for Jyn Ling
2022: Yu Song, Min Hao Ling, Nuttawat Worawitjarungwat, Yuk Kei Wan, Andre Sim, Chen Ying, Christopher Hendra, Jonathan Goeke
2022: Yu Song, Min Hao Ling, Nuttawat Worawitjarungwat, Yuk Kei Wan, Andre Sim, Chen Ying, Christopher Hendra, Jonathan Goeke
Cake :)
Cake :)
hotpot
Korean BBQ
Korean BBQ
2019: Laura Wratten, Ploy Pratanwanich, Chen Ying, Jonathan Goeke, Christopher Hendra
2019: Laura Wratten, Ploy Pratanwanich, Chen Ying, Jonathan Goeke, Christopher Hendra
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