28/07/2020: Congratulations Chen Ying for reeiving the Best Talk award in HiTSeq/ISMB 2020! Chen Ying presented about her method, bambu, for transcript discovery and quantification using Nanopore long read RNA-Seq data (https://github.com/GoekeLab/bambu)
26/06/2020:New Preprint from Ploy Pratanwanich about her method that enables the analysis of differential RNA modifications using direct RNA-Seq data: https://www.biorxiv.org/content/10.1101/2020.06.18.160010v1.full xPore is available through github page: https://github.com/GoekeLab/xpore you can read the documentation here
18/06/2020: Chen Ying and Ploy Pratanwanich will present their work on RNA modifications and transcript quantification at London Calling 2020. You can test their software on out github page: https://github.com/GoekeLab
26/03/2020: The DREAM Challenge paper on multiple myeloma risk prediction is published (you can read it here). Congratulations again to Christine and Jiayi from our group for winning this challenge and contributing the best performing predictor!
05/02/2020: The Pan Cancer Analysis of Whole Genomes (PCAWG) is published! Congratulations to everyone involved from our group, GIS and all international collaborators (see publications)
31/01/2020: Congratulations for winning the Genome Institute of Singapore graduate student prize Deniz!
13/01/2020: Deniz has prepared detailed supplementary tables for his manuscript (Demircioglu et al. (2019)). You can find the additional information here
05/11/2019: Jonathan presents at the Frontiers in Cancer Science meeting in Singapore
05/09/2019: Our first paper is published on the cover of Cell! Congratulations to the first author Deniz Demircioglu and everyone else who has contributed! You can read the article here.
01/07/2019: Postdoctoral positions are available for computational postdocs to work on long read direct RNA-Sequencing, you can contact Jonathan for more details
28/2/2019: You can watch a webinar on the Singapore Nanopore-Expression project today
15/2/2019: Happy Chinese New Year! Some updates to the team site and new pictures from this year’s Lo Hei
1/1/2019: Happy New Year from the Göke lab! Some updates coming soon…
29/11/2018: Jonathan will present data from the Singapore Nanopore-Expression Consortium (SG-NEx) at the Nanopore Community Meeting in San Francisco
16/09/2018:3 new lab members joined us in August and September: Welcome Naruemon Pratanwanich (Ploy), Chen Ying, and Christopher Hendra!
10/09/2018: Jonathan gives a talk about Precision Medicine and Genomics Technologies in Singapore at the Data Science in Health Symposium, Marina Bay Sands Expo & Convention Centre
24/06/2018: New publication from the Göke lab in collaboration with Azims Surani and Chris Smith in Cambridge: SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements.
16/03/2018: Jonathan present at the Global Young Investigator Forum 2018 in Nagoya, Japan
14/03/2018: Jonathan will present 2 workshops on analysing ChIP-Seq data, RNA-Seq data, and experimental design at Nagoya University
10/01/2018: New postdoc position available! Have a look in the postdoc section and feel free to write to Jonathan for more information.
14/12/2017: Our team ranked top in the Dream Multiple Myeloma Risk Prediction machine learning challenge! Congratulations to Christine Eng and Jiayi Bao!
07/11/2017: Jonathan presents at the EMBL Cancer Genomics meeting in Heidelberg
13/09/2017: Jonathan will give a talk in the Computational Biology lunchtime seminar at DUKE-NUS today, 12-1pm
16/08/2017: The lab’s first biorxiv preprint is posted online: A pan cancer analysis of promoter activity highlights the regulatory role of alternative transcription start sites and their association with noncoding mutations
31/07/2017: Christine Eng joined our group to work on machine learning using genomics and clinical data. Welcome Christine!
24/07/2017: Deniz Demircioglu from our group presents his work on promoters in cancer at ISMB 2017 in Prague. Congratulations Deniz
09/05/2017: Jonathan will present about the group’s work on promoters in cancer at the CSH Biology of Genomes meeting.
20/04/2017: Martin Kindermans joined our group in March. Welcome!
