06/01/2022: Congratulations to Chen Ying and collaborators Nadia Davdison and Alicia Oshlak for publishing JAFFAL, a method for fusion detection form long read RNA-Seq data in Genome Biology! (link)
25/10/2021: Congratulations PhD student Yuk Kei Wan on publishing this review about machine learning for Nanopore signal data published in Trends in Genetics! You can read the article here (open access link coming soon)
23/09/2021: New publication on bioinformatics workflow managers by visiting student Laura Wratten in Nature Methods. Congratulations Laura! You can read the article here
03/08/2021: Andre Sim and Joseph Lee will present their work on proActiv and bambu at BioC2020, you can still register!
21/07/2021: Our manuscript describing xPore is published in Nature Biotechnology! Congratulations Ploy Pratanwanich, Yuk Kei Wan, Chen Ying and all collaborators! xPore is available on github, with detailed documentation. You can read the paper here
22/04/2021: New preprints from our group is online! You can read about the Singapore Nanopore Expression project here, the data is available through github. Congratulations to first author Chen Ying!
28/08/2020: Jonathan will present at the Victoria Cancer Bioinformatics Meeting (Australia), you can see the program here
28/07/2020: Congratulations Chen Ying for receiving the Best Talk award in HiTSeq/ISMB 2020! Chen Ying presented about her method, bambu, for transcript discovery and quantification using Nanopore long read RNA-Seq data (https://github.com/GoekeLab/bambu)
26/06/2020: New Preprint from Ploy Pratanwanich about her method that enables the analysis of differential RNA modifications using direct RNA-Seq data: https://www.biorxiv.org/content/10.1101/2020.06.18.160010v1.full xPore is available through github page: https://github.com/GoekeLab/xpore you can read the documentation here
18/06/2020: Chen Ying and Ploy Pratanwanich will present their work on RNA modifications and transcript quantification at London Calling 2020. You can test their software on out github page: https://github.com/GoekeLab
26/03/2020: The DREAM Challenge paper on multiple myeloma risk prediction is published (you can read it here). Congratulations again to Christine and Jiayi from our group for winning this challenge and contributing the best performing predictor!
05/02/2020: The Pan Cancer Analysis of Whole Genomes (PCAWG) is published! Congratulations to everyone involved from our group, GIS and all international collaborators (see publications)
31/01/2020: Congratulations for winning the Genome Institute of Singapore graduate student prize Deniz!
13/01/2020: Deniz has prepared detailed supplementary tables for his manuscript (Demircioglu et al. (2019)). You can find the additional information here
05/11/2019: Jonathan presents at the Frontiers in Cancer Science meeting in Singapore
05/09/2019: Our first paper is published on the cover of Cell! Congratulations to the first author Deniz Demircioglu and everyone else who has contributed! You can read the article here.
01/07/2019: Postdoctoral positions are available for computational postdocs to work on long read direct RNA-Sequencing, you can contact Jonathan for more details.
28/2/2019: You can watch a webinar about the Singapore Nanopore-Expression project today
15/2/2019: Happy Chinese New Year! Some updates to the team site and new pictures from this year’s Lo Hei
29/11/2018: Jonathan will present data from the Singapore Nanopore-Expression Consortium (SG-NEx) at the Nanopore Community Meeting in San Francisco
16/09/2018: 3 new lab members joined us in August and September: Welcome Naruemon Pratanwanich (Ploy), Chen Ying, and Christopher Hendra!
10/09/2018: Jonathan gives a talk about Precision Medicine and Genomics Technologies at the Data Science in Health Symposium, Marina Bay Sands Convention Centre
24/06/2018: New publication from the Göke lab in collaboration with Azims Surani and Chris Smith in Cambridge (https://www.nature.com/articles/s414…)
16/03/2018: Jonathan present at the Global Young Investigator Forum 2018 in Nagoya, Japan
14/03/2018: Jonathan will present 2 workshops on analysing ChIP-Seq data, RNA-Seq data, and experimental design at Nagoya University
14/12/2017: Our team ranked top in the Dream Multiple Myeloma Risk Prediction machine learning challenge! Congratulations to Christine Eng and Jiayi Bao!
07/11/2017: Jonathan presents at the EMBL Cancer Genomics meeting in Heidelberg
13/09/2017: Jonathan will give a talk in the Computational Biology lunchtime seminar at DUKE-NUS today, 12-1pm
16/08/2017: The lab’s first biorxiv preprint is posted online: A pan cancer analysis of promoter activity highlights the regulatory role of alternative transcription start sites and their association with noncoding mutations
31/07/2017: Christine Eng joined our group to work on machine learning using genomics and clinical data. Welcome Christine!
24/07/2017: Deniz Demircioglu from our group presents his work on promoters in cancer at ISMB 2017 in Prague. Congratulations Deniz!
09/05/2017: Jonathan will present about the group’s work on promoters in cancer at the CSH Biology of Genomes meeting.
20/04/2017: Martin Kindermans joined our group in March. Welcome!
06/03/2017: “Introduction to Genomics” guest lecture by Jonathan for the Data Science program at NUS, 12-14h, Statistics Department
01/07/2017: Still one open postdoc position is available to work on transcriptomics data and algorithms development, information can be found here.
16/05/2017: The group recruits new postdoctoral fellows! If you have a PhD in computer science, bioinformatics, or statistics and you’re interested in transcriptomics, cancer genomics, or machine learning then send an inquiry email to Jonathan Göke. More information can be found here.
09/05/2017: Jonathan will present about the group’s work on promoters in cancer at the CSH Biology of Genomes meeting.
20/04/2017: Martin Kindermans joined our group in March. Welcome!
06/03/2017: “Introduction to Genomics” guest lecture by Jonathan for the Data Science program at NUS, 12-14h, Statistics Department
02/12/2016: Jonathan presents about word statistics, machine learning, and large-scale data analysis at the Statistics Department of NUS, 4pm
10/11/2016: Today is the c-BIG Symposium 2016, find out more about c-BIG here: http://www.gis.a-star.edu.sg/c-BIG/
10/10/2016: Updated information about research internships and PhD scholarships at GIS.
29/09/2016: The research section was updated to cover some of our ongoing research themes.
21/09/2016: Jonathan presents about tanscriptomics data analysis and experimental design: workshop@ INCOB 2016
20/09/2016: New website launch! Still under construction, look out for updates in the next weeks.
Göke Lab 